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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_26206638_26207991_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26206638 - 26207991
Intron Length:
1354

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAC
U12 Branch Point Sequence:
TTTCTCTTTTTA
Flanking Amino Acid:
ISSDRSDSEREEIEVDVEST
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
71.2
34.2
Major BPS
69.4
0.48
1.1
69.6
35.5
Major PPT
89.5
0.89
0.6
89
20.1
Minor 5ss
27.1
-2.6
3.2
35
41.6
Minor BPS
41.8
-0.6
3.5
67.89
38.5

Associated Gene:

Gene:
MXI1
Ensembl Gene ID:
ENSAPLG00000029323
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034368
26176439 - 26208307
31869
ENSAPLT00000023392
26187939 - 26208307
20369
ENSAPLT00000004486
26176192 - 26208307
32116
ENSAPLT00000044317
26181389 - 26208307
26919