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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_26218333_26219038_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26218333 - 26219038
Intron Length:
706

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTTCA
5'SS Class:
major
3'SS Sequence:
GTTTCATTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TTATTTAGAAAG
Flanking Amino Acid:
RAYSKNKKGQVKRSIFASPE
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
71.5
34.4
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
83.7
0.76
0.8
77.6
35.6
Minor 5ss
42.9
-0.8
2.4
51.4
45
Minor BPS
46
-0.4
1.8
55.15
39.6

Associated Gene:

Gene:
SMNDC1
Ensembl Gene ID:
ENSAPLG00000004322
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004436
26217790 - 26225273
7484