About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_26219193_26219939_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26219193 - 26219939
Intron Length:
747

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTTTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATGTATTT
Flanking Amino Acid:
KEDSGNKPMSKKEMIAQQRE
Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
89.8
22.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
80.5
0.69
0.7
80.2
25.1
Minor 5ss
39.1
-1.2
2.8
51.7
39.1
Minor BPS
45.9
-0.2
2.3
70.74
40.9

Associated Gene:

Gene:
SMNDC1
Ensembl Gene ID:
ENSAPLG00000004322
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004436
26217790 - 26225273
7484