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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_26220102_26221789_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26220102 - 26221789
Intron Length:
1688

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTGTA
5'SS Class:
major
3'SS Sequence:
GATATCTTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAC
U12 Branch Point Sequence:
ATATCTTTACAG
Flanking Amino Acid:
RCMAIWSEDGQCYEAEIEEI
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
75.6
34.3
Major BPS
77.2
0.68
0.8
77.6
26.2
Major PPT
76.8
0.6
0.9
69
41.5
Minor 5ss
38.5
-1.3
3.3
54.7
43.6
Minor BPS
53.4
-0
1.8
59.81
41.9

Associated Gene:

Gene:
SMNDC1
Ensembl Gene ID:
ENSAPLG00000004322
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004436
26217790 - 26225273
7484