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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_26233131_26234893_F

Intron Information:

Intron Rank:
141969
Intron Class:
major
Intron Phase:
Intron Coordinates:
26233131 - 26234893
Intron Length:
1763

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTGAGTCAT
5'SS Class:
major
3'SS Sequence:
TTTTGCCATGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTACTGTATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.9
0.52
1
67.7
39.3
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
80
0.68
0.9
74.5
35.4
Minor 5ss
31.7
-2.1
3
37.7
40.9
Minor BPS
49.5
-0.1
2
65.37
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026430
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018342
26233052 - 26235894
2843