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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_26233131_26235329_F

Intron Information:

Intron Rank:
141971
Intron Class:
major
Intron Phase:
Intron Coordinates:
26233131 - 26235329
Intron Length:
2199

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTGAGTCAT
5'SS Class:
major
3'SS Sequence:
TCCACATTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TCATCCTTATTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.9
0.52
1
67.7
39.3
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
75.8
0.58
0.9
69
35.8
Minor 5ss
31.7
-2.1
3
37.7
40.9
Minor BPS
66.3
0.49
1.6
70.94
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026430
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029469
26233071 - 26235894
2824