Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_26236789_26237878_F

Intron Information:

Intron Rank:

144800

Intron Class:

major

Intron Phase:

Intron Coordinates:

26236789 - 26237878

Intron Length:

1090

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCT|GTAAGTGCA

5'SS Class:

major

3'SS Sequence:

TCTTCTTTTTGAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATGTAAT

U12 Branch Point Sequence:

CAAAATGTAATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.3

0.57

1.1

68.4

36.6

Major BPS

75.6

0.64

1.1

75.7

36.5

Major PPT

70.8

0.47

1.7

84.1

30.8

Minor 5ss

35.9

-1.6

3.2

51.5

44.9

Minor BPS

42.7

-0.4

2.1

55.34

40.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028054

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029356

26236426 - 26242316

5891

ENSAPLT00000022790

26236426 - 26238311

1886