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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_26238063_26242255_F

Intron Information:

Intron Rank:
144812
Intron Class:
major
Intron Phase:
Intron Coordinates:
26238063 - 26242255
Intron Length:
4193

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTGA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACTGAT
U12 Branch Point Sequence:
GGTTAGGTGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.9
75
38.1
Major BPS
65.8
0.39
1.2
57.3
41.7
Major PPT
90.3
0.91
0.7
88.9
28.1
Minor 5ss
43.2
-0.7
2.9
56.2
47.9
Minor BPS
42
-0.5
2.7
65.71
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028054
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047556
26236426 - 26242316
5891