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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_26244473_26244729_F

Intron Information:

Intron Rank:
137845
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
26244473 - 26244729
Intron Length:
257

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
GCATCTGGATCAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTTTTTTGCATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
74
36.6
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
56.6
0.15
1.1
54.7
44.5
Minor 5ss
29.1
-2.4
3.2
37.3
42.5
Minor BPS
51.4
0.03
1.8
70.08
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024232
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031367
26244393 - 26247846
3454