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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_2631454_2636355_F

Intron Information:

Intron Rank:
1
Intron Class:
minor-like
Intron Phase:
2
Intron Coordinates:
2631454 - 2636355
Intron Length:
4902

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTATTCATT
5'SS Class:
weak_minor
3'SS Sequence:
TCCAGGAGCTAAG|T
3'SS Class:
degenerate_minor
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
TACACTTCAAAT
Flanking Amino Acid:
AQTILKSLQNHDLQRDPPAH
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55.3
0.13
1.1
61.3
43
Major BPS
77.3
0.68
1
81.5
27
Major PPT
47.3
-0.1
1.1
44.6
40.3
Minor 5ss
62.9
0.43
2.3
80.5
33.2
Minor BPS
51.2
0.12
1.7
67.64
42.7

Associated Gene:

Gene:
UBE2D1
Ensembl Gene ID:
ENSAPLG00000029826
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044373
2631389 - 2640692
9304