About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_26325990_26326032_F


Intron Information:

Intron Rank:
2

Intron Class:
major-like

Intron Phase:
0

Intron Coordinates:
26325990 - 26326032

Intron Length:
43

Sequence Information:

Terminal Dinucleotides:
GC-AG

5'SS Sequence:
GAG|GCGGCCCGA

5'SS Class:
major

3'SS Sequence:
GGAGACGGGGCAG|G

3'SS Class:
degenerate_major

U2 Branch Point Sequence:
GGGAGAC

U12 Branch Point Sequence:
GTGGGGGAGACG

Flanking Amino Acid:
VPLHFVVPDEGRGGTRLAAV

Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
63.5
0.32
1.2
46.4
41.7

Major BPS
38.6
-0.7
1.2
23.8
34.6

Major PPT
45.7
-0.2
1.2
31.3
41.5

Minor 5ss
25.6
-2.8
4.1
38.4
46.6

Minor BPS
26.3
-2
2.6
29.87
42.2

Associated Gene:

Gene:
DUSP5

Ensembl Gene ID:

Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

26321783 - 26334260
12478