About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_26326187_26330029_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26326187 - 26330029
Intron Length:
3843

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGATC
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTTCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTAACAT
U12 Branch Point Sequence:
ACATCCGCAATT
Flanking Amino Acid:
EAGARVCFLKGGYETFNSQY
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.8
82.1
31
Major BPS
58.7
0.22
1.2
67
38
Major PPT
75.7
0.58
0.7
69.2
31.4
Minor 5ss
31.4
-2.1
3.2
42.1
45
Minor BPS
48.4
-0
2.2
67.34
43.7

Associated Gene:

Gene:
DUSP5
Ensembl Gene ID:
ENSAPLG00000004277
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004385
26321783 - 26334260
12478