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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_26331725_26333859_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26331725 - 26333859
Intron Length:
2135

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAGGTGCC
5'SS Class:
major
3'SS Sequence:
TCTTTTTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTGAT
U12 Branch Point Sequence:
TCTGCAATGACT
Flanking Amino Acid:
SHFQEAIDFIDYVRRTGGKI
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
68.2
38.6
Major BPS
67.4
0.43
1.1
57.1
41.8
Major PPT
86.9
0.83
0.7
80.6
31.5
Minor 5ss
33
-1.9
3.4
44.8
43.3
Minor BPS
49.3
0.03
2
73.39
43.4

Associated Gene:

Gene:
DUSP5
Ensembl Gene ID:
ENSAPLG00000004277
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004385
26321783 - 26334260
12478