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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_26352263_26352571_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26352263 - 26352571
Intron Length:
309

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAATA
5'SS Class:
strong_major
3'SS Sequence:
TAAATTTGTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
ACATGCTTAAAT
Flanking Amino Acid:
AQQDARDKMEEIERQVRELK
Intron Amino Acid Position:
269

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
83.2
28.3
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
67
0.38
1
62.4
43.6
Minor 5ss
36.4
-1.5
3.1
48.8
46.9
Minor BPS
58.2
0.34
1.9
72.58
43.9

Associated Gene:

Gene:
SMC3
Ensembl Gene ID:
ENSAPLG00000003586
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003819
26344324 - 26367748
23425