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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_26352737_26353071_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26352737 - 26353071
Intron Length:
335

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTACGTAGC
5'SS Class:
major
3'SS Sequence:
GTTTCACTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
CTCACTTTAAAT
Flanking Amino Acid:
DELAGNSEQRKRLLKERQKL
Intron Amino Acid Position:
324

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1.1
67.3
44.3
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
82
0.72
0.8
78.3
35.2
Minor 5ss
34.6
-1.8
2.9
36.8
40.3
Minor BPS
62.7
0.48
1.5
73.52
43.4

Associated Gene:

Gene:
SMC3
Ensembl Gene ID:
ENSAPLG00000003586
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003819
26344324 - 26367748
23425