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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_26354975_26355182_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26354975 - 26355182
Intron Length:
208

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTTAGTAAT
5'SS Class:
major
3'SS Sequence:
TTTCTGTATGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TCACCTTTAAAT
Flanking Amino Acid:
NKKDELQSERNYLWREENAE
Intron Amino Acid Position:
470

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.1
81.9
30.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
81.9
0.72
0.9
77.3
36
Minor 5ss
35.5
-1.6
2.7
44.7
36.6
Minor BPS
65.6
0.57
1.4
75.64
40.7

Associated Gene:

Gene:
SMC3
Ensembl Gene ID:
ENSAPLG00000003586
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003819
26344324 - 26367748
23425