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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_26355909_26357059_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26355909 - 26357059
Intron Length:
1151

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTACT
5'SS Class:
strong_major
3'SS Sequence:
ACTTGTTAATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAA
U12 Branch Point Sequence:
GTTTCTTGGACT
Flanking Amino Acid:
YTCVEVTAGNRLFYHIVDSD
Intron Amino Acid Position:
557

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
86.4
28.9
Major BPS
72.1
0.55
1.2
63.7
43.9
Major PPT
64.3
0.32
1
63.9
41.3
Minor 5ss
38.4
-1.3
2.7
52.9
43.7
Minor BPS
69.7
0.7
1.4
84.78
35.4

Associated Gene:

Gene:
SMC3
Ensembl Gene ID:
ENSAPLG00000003586
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003819
26344324 - 26367748
23425