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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_26361067_26361283_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26361067 - 26361283
Intron Length:
217

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGCAA
5'SS Class:
major
3'SS Sequence:
ACCTGTTCCATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTAAT
U12 Branch Point Sequence:
TTCTGTCTAATA
Flanking Amino Acid:
QQSEKTFMPKQRSLQSLEAS
Intron Amino Acid Position:
757

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.7
0.46
1.1
59.3
41.3
Major BPS
76.7
0.66
1.2
77.9
34.9
Major PPT
66.9
0.38
0.8
60.9
34.6
Minor 5ss
28.3
-2.5
3.5
38
46.9
Minor BPS
49.8
-0
2.1
67.2
40.2

Associated Gene:

Gene:
SMC3
Ensembl Gene ID:
ENSAPLG00000003586
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003819
26344324 - 26367748
23425