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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_26361443_26361809_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26361443 - 26361809
Intron Length:
367

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGAGGA
5'SS Class:
major
3'SS Sequence:
TTTTTTTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATATAC
U12 Branch Point Sequence:
AGACGCTGAATA
Flanking Amino Acid:
LNDEIRQLQQENRQLLNERI
Intron Amino Acid Position:
810

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
68.9
36.3
Major BPS
52.8
0.07
1
50.7
33.9
Major PPT
90.7
0.92
0.6
84.9
29.9
Minor 5ss
31.5
-2.1
3.4
38.5
40.9
Minor BPS
46.7
-0.2
1.8
54.27
37.7

Associated Gene:

Gene:
SMC3
Ensembl Gene ID:
ENSAPLG00000003586
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003819
26344324 - 26367748
23425