About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_26361918_26362348_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26361918 - 26362348
Intron Length:
431

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGGATT
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTCTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
ATGGCATTTACT
Flanking Amino Acid:
LRKRLDQVEQELNELRETEG
Intron Amino Acid Position:
846

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
85.3
31.4
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
81.6
0.71
0.8
76.6
32.2
Minor 5ss
39.9
-1.1
3.4
58
40.7
Minor BPS
49.9
0.07
2
71.49
45

Associated Gene:

Gene:
SMC3
Ensembl Gene ID:
ENSAPLG00000003586
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003819
26344324 - 26367748
23425