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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_26363639_26364314_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26363639 - 26364314
Intron Length:
676

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACAAAA
5'SS Class:
major
3'SS Sequence:
TGTCTCCTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCATGATAT
Flanking Amino Acid:
YEAIQLTFKQVSKNFSEVFQ
Intron Amino Acid Position:
1036

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1.1
76.9
33.7
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
72.8
0.51
1
76
32.9
Minor 5ss
38.3
-1.3
2.9
48.8
46.9
Minor BPS
48.6
-0
2
74.47
41.4

Associated Gene:

Gene:
SMC3
Ensembl Gene ID:
ENSAPLG00000003586
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003819
26344324 - 26367748
23425