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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_2636537_2640334_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2636537 - 2640334
Intron Length:
3798

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
AGTTTTAGAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
GCTCTCTAAACC
Flanking Amino Acid:
FHWQATIMGPCQCTWYMSRR
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.65
1.1
80.4
34
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
64.3
0.32
1.1
59.6
44.5
Minor 5ss
42.2
-0.9
2.9
61.3
43
Minor BPS
56
0.17
1.7
63.92
41.7

Associated Gene:

Gene:
UBE2D1
Ensembl Gene ID:
ENSAPLG00000029826
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044640
2635161 - 2640421
5261