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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_2645805_2646656_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2645805 - 2646656
Intron Length:
852

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCGGGG
5'SS Class:
major
3'SS Sequence:
TTTCAATACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCAAT
U12 Branch Point Sequence:
TTGATCTTGACT
Flanking Amino Acid:
RQGPLRRQHPELSNTELVKK
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.7
0.32
1.3
49.8
46.9
Major BPS
76.9
0.67
1.2
85
31.9
Major PPT
71.9
0.49
1
65.9
38.8
Minor 5ss
33.1
-1.9
3.7
46.9
48.5
Minor BPS
71.9
0.77
1.3
83.38
37.8

Associated Gene:

Gene:
TFAM
Ensembl Gene ID:
ENSAPLG00000010787
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029820
2644840 - 2652106
7267
ENSAPLT00000011238
2644749 - 2652106
7358