About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_26470971_26471125_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26470971 - 26471125
Intron Length:
155

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAA
U12 Branch Point Sequence:
TGCTCCTAAAGT
Flanking Amino Acid:
HIQKCMAFSDNTGIRCVLSS
Intron Amino Acid Position:
267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
72.7
0.57
1
72.1
31.1
Major PPT
95
1.01
0.6
88.4
28.7
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
58.6
0.35
2
76.24
46.3

Associated Gene:

Gene:
RBM20
Ensembl Gene ID:
ENSAPLG00000003582
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003649
26415143 - 26492162
77020