About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_26471218_26471558_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26471218 - 26471558
Intron Length:
341

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAATGGT
5'SS Class:
strong_major
3'SS Sequence:
ATCCATTATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTCACGAAAT
Flanking Amino Acid:
AAVFNPSSIEDYPPNVGSSF
Intron Amino Acid Position:
298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
74.6
35.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
68.8
0.42
0.9
66.6
38.8
Minor 5ss
28.3
-2.5
3.3
40.6
45.6
Minor BPS
49.9
0.07
2.1
80.99
39.5

Associated Gene:

Gene:
RBM20
Ensembl Gene ID:
ENSAPLG00000003582
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003649
26415143 - 26492162
77020