About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_26476144_26477041_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26476144 - 26477041
Intron Length:
898

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGTGC
5'SS Class:
major
3'SS Sequence:
CCATTTGTGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TAGATTTTAAAG
Flanking Amino Acid:
NYILMKSTNQAFLEMAYSEA
Intron Amino Acid Position:
377

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.1
57.8
42.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
63
0.29
1
57.4
43.1
Minor 5ss
36.1
-1.6
3.4
50.8
45.8
Minor BPS
52.1
-0
1.5
53.99
41

Associated Gene:

Gene:
RBM20
Ensembl Gene ID:
ENSAPLG00000003582
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003649
26415143 - 26492162
77020