About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_26479088_26479917_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26479088 - 26479917
Intron Length:
830

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAGTTAC
U12 Branch Point Sequence:
CAGCCAGTTACA
Flanking Amino Acid:
RERDLLREADSRYGTERPRS
Intron Amino Acid Position:
447

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
81.9
32.1
Major BPS
51.3
0.03
1.2
44.7
38.3
Major PPT
89.3
0.88
0.6
84.8
22.8
Minor 5ss
42
-0.9
3.5
64.1
47.4
Minor BPS
39
-0.8
2.3
46.83
42.7

Associated Gene:

Gene:
RBM20
Ensembl Gene ID:
ENSAPLG00000003582
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003649
26415143 - 26492162
77020