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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_26480606_26482514_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26480606 - 26482514
Intron Length:
1909

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATAGA
5'SS Class:
strong_major
3'SS Sequence:
GTATTTATTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTGTATTTATTT
Flanking Amino Acid:
LKETKPAENKLGKEEQNAEK
Intron Amino Acid Position:
677

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
80.4
34.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
76.8
0.6
0.9
74.9
39.6
Minor 5ss
34.4
-1.8
2.8
42.8
44
Minor BPS
57.6
0.32
1.8
76.35
41

Associated Gene:

Gene:
RBM20
Ensembl Gene ID:
ENSAPLG00000003582
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003649
26415143 - 26492162
77020