Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_2650152_2651134_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2650152 - 2651134

Intron Length:

983

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGTTTG

5'SS Class:

strong_major

3'SS Sequence:

GCTTGTCTTCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTCCAC

U12 Branch Point Sequence:

CTTTCCACAACT

Flanking Amino Acid:

WQNLPSSEKQPYLQLAEDDK

Intron Amino Acid Position:

219

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.6

0.91

0.8

80.5

Major BPS

67.4

0.43

1.3

78.4

35.2

Major PPT

78.9

0.65

0.9

69.2

41.8

Minor 5ss

49.9

-0

2.4

66.4

45.1

Minor BPS

64.8

0.54

1.9

85.52

40.5

Associated Gene:

Gene:

TFAM

Ensembl Gene ID:

ENSAPLG00000010787

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029820

2644840 - 2652106

7267

ENSAPLT00000011238

2644749 - 2652106

7358