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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_26513799_26515788_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26513799 - 26515788
Intron Length:
1990

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGCAA
5'SS Class:
major
3'SS Sequence:
AAATCTTATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TGTTTTTCAAAT
Flanking Amino Acid:
IKDPNYDDDQEMLKDLNLGE
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
65.8
41.7
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
70.3
0.46
1
67.1
43
Minor 5ss
28.7
-2.4
3.4
37.4
47.3
Minor BPS
60.2
0.4
1.6
77.94
38.2

Associated Gene:

Gene:
PDCD4
Ensembl Gene ID:
ENSAPLG00000003137
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038290
26508259 - 26522950
14692