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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_26515554_26515788_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26515554 - 26515788
Intron Length:
235

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTATGTCAC
5'SS Class:
major
3'SS Sequence:
AAATCTTATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TGTTTTTCAAAT
Flanking Amino Acid:
FEHGDTNEVSEMLKDLNLGE
Intron Amino Acid Position:
184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
65.3
40.6
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
70.3
0.46
1
67.1
43
Minor 5ss
41.1
-1
2.8
53.5
43.8
Minor BPS
60.2
0.4
1.6
77.94
38.2

Associated Gene:

Gene:
PDCD4
Ensembl Gene ID:
ENSAPLG00000003137
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003246
26508259 - 26522950
14692