About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_26516011_26516290_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26516011 - 26516290
Intron Length:
280

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATCTG
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
GTTTATTTAAAA
Flanking Amino Acid:
LVLDSPRAPQLVGQFIARAV
Intron Amino Acid Position:
258

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
67.7
43.2
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
94.7
1.01
0.5
91.9
19.2
Minor 5ss
43.3
-0.7
2.9
58.1
46.5
Minor BPS
64.9
0.46
1.6
74.66
36.2

Associated Gene:

Gene:
PDCD4
Ensembl Gene ID:
ENSAPLG00000003137
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038290
26508259 - 26522950
14692
ENSAPLT00000003246
26508259 - 26522950
14692