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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_26516389_26517599_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26516389 - 26517599
Intron Length:
1211

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
CTTTACTAAAAT
Flanking Amino Acid:
YKGTVDCIQARAALDRATVL
Intron Amino Acid Position:
290

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
76.2
34.2
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
87.7
0.85
0.6
81.3
30.7
Minor 5ss
41.9
-0.9
2.7
55
42.2
Minor BPS
56.4
0.28
2
78.16
43.8

Associated Gene:

Gene:
PDCD4
Ensembl Gene ID:
ENSAPLG00000003137
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003246
26508259 - 26522950
14692
ENSAPLT00000038290
26508259 - 26522950
14692