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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_26520624_26521889_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26520624 - 26521889
Intron Length:
1266

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGATGTT
5'SS Class:
major
3'SS Sequence:
TGCTTTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
ACTTCCTGAAAA
Flanking Amino Acid:
SKPLRDLCPSRGRKRFVSEG
Intron Amino Acid Position:
448

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
78.6
35.9
Major BPS
69.6
0.49
1
59.5
39
Major PPT
85.5
0.8
0.8
79.8
32.3
Minor 5ss
36.6
-1.5
3.7
57.3
47.4
Minor BPS
65.4
0.48
1.6
72.35
39.1

Associated Gene:

Gene:
PDCD4
Ensembl Gene ID:
ENSAPLG00000003137
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038290
26508259 - 26522950
14692
ENSAPLT00000003246
26508259 - 26522950
14692