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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_2652830_2652940_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2652830 - 2652940
Intron Length:
111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGCACC
5'SS Class:
major
3'SS Sequence:
CCCTCTCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
GGCTCCTGAATG
Flanking Amino Acid:
QEYWRLLFKKISVKDIEDFE
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.3
69.7
41.3
Major BPS
69.6
0.49
1
59.5
39
Major PPT
78.6
0.64
0.7
72.5
25.7
Minor 5ss
36.1
-1.6
2.7
44.7
42.9
Minor BPS
58.6
0.13
1.6
57.97
43.5

Associated Gene:

Gene:
DNAJC9
Ensembl Gene ID:
ENSAPLG00000026355
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030306
2652398 - 2654957
2560