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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_2654071_2654812_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2654071 - 2654812
Intron Length:
742

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TTCCCTCCCACA
Flanking Amino Acid:
GEDDLKALIQSRNKDRKKEM
Intron Amino Acid Position:
229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
76.2
39.3
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
77.9
0.63
0.7
72.3
26
Minor 5ss
38.4
-1.3
3.6
56.8
41.8
Minor BPS
42.5
-0.6
2.1
57.53
42

Associated Gene:

Gene:
DNAJC9
Ensembl Gene ID:
ENSAPLG00000026355
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030306
2652398 - 2654957
2560