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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_2658147_2659127_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2658147 - 2659127
Intron Length:
981

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCCTA
5'SS Class:
strong_major
3'SS Sequence:
CTCTATTTATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
AAATCTTAAAGT
Flanking Amino Acid:
SWPSRGSTDSGLHPHGSVKA
Intron Amino Acid Position:
585

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
70.6
41.3
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
77.9
0.63
0.9
77.3
35.3
Minor 5ss
47.5
-0.2
2.8
64.7
46.6
Minor BPS
50.7
0.1
1.9
68.11
42.8

Associated Gene:

Gene:
FAM149B1
Ensembl Gene ID:
ENSAPLG00000010310
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017263
2658073 - 2669669
11597
ENSAPLT00000010760
2658073 - 2670323
12251
ENSAPLT00000037611
2658073 - 2669669
11597