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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_26585586_26586946_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26585586 - 26586946
Intron Length:
1361

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGCAC
5'SS Class:
strong_major
3'SS Sequence:
TGTTAAATCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
GATATGTTAAAT
Flanking Amino Acid:
AKVLSKLNMKDNQLTSLPLD
Intron Amino Acid Position:
388

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
69.1
37.5
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
70.3
0.46
1
62.7
41.9
Minor 5ss
25.6
-2.8
3.1
31.9
42.9
Minor BPS
48.3
-0
2.1
67.88
42.3

Associated Gene:

Gene:
SHOC2
Ensembl Gene ID:
ENSAPLG00000002846
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002901
26532135 - 26591129
58995