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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_26589640_26590833_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26589640 - 26590833
Intron Length:
1194

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGACCT
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTAACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTTAACC
Flanking Amino Acid:
NLLTHLPEEIGTLENLEELY
Intron Amino Acid Position:
514

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
70.8
39.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
76
0.59
1
71.3
43.1
Minor 5ss
34.7
-1.7
3.2
46.8
42.3
Minor BPS
77
0.83
1.1
82.48
30.8

Associated Gene:

Gene:
SHOC2
Ensembl Gene ID:
ENSAPLG00000002846
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002901
26532135 - 26591129
58995