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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_2659210_2660096_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2659210 - 2660096
Intron Length:
887

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAAGCAT
5'SS Class:
major
3'SS Sequence:
CCTGTCTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
AGTAACTTGACC
Flanking Amino Acid:
SRPKTTNVFLPDPQRRRSCS
Intron Amino Acid Position:
558

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1
64.6
40.9
Major BPS
100
1.24
0.5
100
0
Major PPT
82
0.72
0.8
75.4
33.1
Minor 5ss
31.9
-2.1
3.5
43.7
45.1
Minor BPS
59.1
0.27
1.6
67.19
37.7

Associated Gene:

Gene:
FAM149B1
Ensembl Gene ID:
ENSAPLG00000010310
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010760
2658073 - 2670323
12251
ENSAPLT00000037611
2658073 - 2669669
11597
ENSAPLT00000017263
2658073 - 2669669
11597