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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_2660223_2660543_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2660223 - 2660543
Intron Length:
321

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAATAGGC
5'SS Class:
major
3'SS Sequence:
TCCTTCAATGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TCATCCTTCAAT
Flanking Amino Acid:
VGTTGSQRQTKSRGNSSRSQ
Intron Amino Acid Position:
516

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.8
0.47
1.1
57.4
40.4
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
75.4
0.57
0.9
70.3
33.9
Minor 5ss
31.3
-2.1
3.4
42.6
44.4
Minor BPS
61.8
0.45
1.9
78.07
43.9

Associated Gene:

Gene:
FAM149B1
Ensembl Gene ID:
ENSAPLG00000010310
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037611
2658073 - 2669669
11597
ENSAPLT00000017263
2658073 - 2669669
11597
ENSAPLT00000010760
2658073 - 2670323
12251