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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_2660671_2661484_R

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
2660671 - 2661484
Intron Length:
814

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTATGTTTC
5'SS Class:
weak_major
3'SS Sequence:
TGGTGCGTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TTTTTCTTACTG
Flanking Amino Acid:
SVDDVFRGTRILTAYEQLTS
Intron Amino Acid Position:
473

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
77
32.4
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
70.4
0.46
1
65.7
45.4
Minor 5ss
61.5
0.39
2.2
74.2
34.9
Minor BPS
68.5
0.44
1.6
74.4
38.6

Associated Gene:

Gene:
FAM149B1
Ensembl Gene ID:
ENSAPLG00000010310
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037611
2658073 - 2669669
11597
ENSAPLT00000017263
2658073 - 2669669
11597
ENSAPLT00000010760
2658073 - 2670323
12251