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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_2661695_2662298_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2661695 - 2662298
Intron Length:
604

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGAGCT
5'SS Class:
major
3'SS Sequence:
TTTCTTTTGTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
GTTTCTTTTGTT
Flanking Amino Acid:
QRNLPVMEKTLDLDDKRPGS
Intron Amino Acid Position:
403

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
65.9
38.1
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
82.4
0.73
0.9
84.8
30
Minor 5ss
36
-1.6
3.6
58.7
45.3
Minor BPS
44
-0.3
3.5
76.22
41.1

Associated Gene:

Gene:
FAM149B1
Ensembl Gene ID:
ENSAPLG00000010310
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037611
2658073 - 2669669
11597
ENSAPLT00000017263
2658073 - 2669669
11597
ENSAPLT00000010760
2658073 - 2670323
12251