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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_26637530_26638158_F

Intron Information:

Intron Rank:
151006
Intron Class:
major
Intron Phase:
Intron Coordinates:
26637530 - 26638158
Intron Length:
629

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTGCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
ATATGCTTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
69.6
42.7
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
78.2
0.63
0.9
72.5
37.8
Minor 5ss
30.1
-2.3
3.2
37.6
47.1
Minor BPS
71.2
0.66
1.7
78.87
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031126
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032342
26636069 - 26638472
2404