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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_26650694_26652750_F

Intron Information:

Intron Rank:
149951
Intron Class:
major
Intron Phase:
Intron Coordinates:
26650694 - 26652750
Intron Length:
2057

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
TCTGTCCATGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTGTTCTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.9
77
33.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
71.9
0.49
0.9
66.8
34.5
Minor 5ss
35.2
-1.7
2.9
41.4
39.1
Minor BPS
69
0.67
1.5
83.01
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030660
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044389
26650518 - 26660725
10208