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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_26652831_26659882_F

Intron Information:

Intron Rank:
149952
Intron Class:
major
Intron Phase:
Intron Coordinates:
26652831 - 26659882
Intron Length:
7052

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GGTTGTTTAAGA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.1
1.11
0.7
89.8
22.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
92.9
0.96
0.7
88.5
28.1
Minor 5ss
36
-1.6
2.6
43.5
43.6
Minor BPS
51.2
0.03
2
64.4
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030660
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044389
26650518 - 26660725
10208