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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_26659934_26661515_F

Intron Information:

Intron Rank:
149946
Intron Class:
major
Intron Phase:
Intron Coordinates:
26659934 - 26661515
Intron Length:
1582

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TCTCACCCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
ACCTCTTTAGCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
77.9
38.6
Major BPS
85
0.87
0.8
85.6
23
Major PPT
72.6
0.51
0.8
65.9
29.7
Minor 5ss
33.7
-1.9
3
41.1
45.5
Minor BPS
63.1
0.49
1.6
73.74
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030660
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031215
26659695 - 26663865
4171