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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_2666077_2666745_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2666077 - 2666745
Intron Length:
669

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
GTCGCCTGTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GCTTTCTGAAAA
Flanking Amino Acid:
VSSSQEKDSNEFSVFGKKVP
Intron Amino Acid Position:
184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
79
35.3
Major BPS
100
1.24
0.5
100
0
Major PPT
67.8
0.4
1
61.2
40.1
Minor 5ss
41.6
-0.9
2.8
51.4
39.2
Minor BPS
58.3
0.26
1.6
66.07
39.9

Associated Gene:

Gene:
FAM149B1
Ensembl Gene ID:
ENSAPLG00000010310
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037611
2658073 - 2669669
11597
ENSAPLT00000017263
2658073 - 2669669
11597
ENSAPLT00000010760
2658073 - 2670323
12251