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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_2666866_2667503_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2666866 - 2667503
Intron Length:
638

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTTAT
5'SS Class:
major
3'SS Sequence:
TTTGCCCTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATGTATTTATCC
Flanking Amino Acid:
QQWTSNFPHLRVVGKQIVIP
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
78.6
31.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
74
0.54
1
69.9
36.5
Minor 5ss
48
-0.2
2.5
66.9
44.3
Minor BPS
54
0.11
1.8
65.47
40.3

Associated Gene:

Gene:
FAM149B1
Ensembl Gene ID:
ENSAPLG00000010310
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017263
2658073 - 2669669
11597
ENSAPLT00000010760
2658073 - 2670323
12251
ENSAPLT00000037611
2658073 - 2669669
11597