About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_2668862_2669448_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2668862 - 2669448
Intron Length:
587

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTGTC
5'SS Class:
major
3'SS Sequence:
GTGTGCATTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTGCAT
U12 Branch Point Sequence:
TTTGCCTCAATG
Flanking Amino Acid:
PILENYGEISSESEISKESD
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
74.2
34.5
Major BPS
59.8
0.25
1.5
71.4
45.1
Major PPT
71.7
0.49
1
66.8
43.8
Minor 5ss
43.4
-0.7
3.1
61.2
43.7
Minor BPS
65
0.33
1.7
71.5
41.9

Associated Gene:

Gene:
FAM149B1
Ensembl Gene ID:
ENSAPLG00000010310
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037611
2658073 - 2669669
11597
ENSAPLT00000017263
2658073 - 2669669
11597
ENSAPLT00000010760
2658073 - 2670323
12251